[37], and acetyl xylan esterase (Cthe_3063) also increased contradicting previously reported microarray data [37]. CelC expression (Cthe_2807), which is negatively regulated by the co-transcribed LacI family transcriptional regulator GlyR3 (Cthe_2808), has consistently been shown to increase in the presence of laminaribiose [67] and in stationary phase on cellulose [37] and cellobiose [28]. While CelC expression was shown to have an overall increase in stationary phase among

biological replicates, deviation between replicates makes it difficult to tell if this is simply an articat. Finally, of the 7 membrane-associated RsgI-like anti-σI factors proposed to activate expression of different glycosidases in the presence of cellulose and other polysaccharides, three have been detected (Cthe_0059, Cthe_0267, and Cthe_2521). Angiogenesis inhibitor The binding of BMS-777607 cost a particular polysaccharide to corresponding anti-σI factor N-terminal carbohydrate binding domains is proposed to promote the C-terminal release of putative alternative σI-factors (SigI) encoded upstream of these anti-σI factors, allowing for expression of select glycosidases, some of which (ex. CelA) are encoded downstream of the anti-σI factors that regulate their expression [33, 36]. Figure 2

Relative abundance indexes and changes in protein expression levels of protein involved in glycolysis, glycogen metabolism, and pentose phosphate pathway. Relative abundance indexes (values 1 and 2), changes in protein Depsipeptide nmr expression ratios (value 3), and associated V diff values (value 4) indicating confidence levels of changes in expression ratios are indicated for enzymes involved in (A) glycolysis, (B) glycogen metabolism, and (C) pentose phosphate pathway. Given the absence of genes encoding transaldolase, we propose an alternative pathway for production of xylulose-5-phosphate and ribose-5-phosphate using fructose-1,6-P aldolase and PPi phosphofructokinase. Metabolites shown in grey are those commonly metabolized by these enzymes. G-1-P, glucose-1-phosphate; G-6-P, glucose-6-phosphate;

F-1-P, fructose-1-phosphate; F-1,6-P, fructose-1,6-bisphosphate; DHA-P, dihydroxyacetone phosphate; GA-3-P, glyceraldehydes-3-phosphate; PG, phosphoglycerate; PEP, phosphoenolpyruvate; X-5-P, xylulose-5-phosphate; E-4-P, erythrose-4-phosphate; S-7-P, sedoheptulose-7-phosphate; S-1,7-P, sedoheptulose-1,7-phosphate; R-5-P, ribose-5-phosphate; Ru-5-P, ribulose-5-phosphate. Cellodextrin transport Oligosaccharides derived from cellulose hydrolysis are actively transported via ATP-dependent cello-oligosaccharide ABC transporters [68]. Of the five encoded cello-oligosaccharide ABC transporters, only Cthe_0391-0393, Cthe_1018-1020, and Cthe_1862 were detected in significant amounts, consistent with mRNA expression levels reported by Raman et al.[37].